PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 275aa    MW: 29171.4 Da    PI: 7.7209
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.6e-40531541101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael
  XP_013629936.1  53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 147
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     +l++++l
  XP_013629936.1 148 SLVQSQL 154
                     ***9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26352154IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3953151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MADQQRSGHN TSDSRRKLAA GRRTSQHNTT SSLSSGGGAM AAAATTGTGT VSPCGACKFL  60
RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA  120
RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQQN HHQQHQQLVV  180
MQQPEYSNNS SASTTLAGAA MNSFTATAEA AAAVSYDVMA PANLEHPLQH VPRHQQGSGN  240
QHEDEEESGT EFSLAAGSTA LAAEVIYPAE GFHRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629936.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-147LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0D3AFT10.0A0A0D3AFT1_BRAOL; Uncharacterized protein
STRINGBra036436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-105LOB domain-containing protein 20